1- Dhakal, Binaya, Lakshmi Sai Kishore, and Khaled Sayed. "Integrating multi-compartment microbiome data with clinical parameters enhances mortality prediction using autoencoder." Journal of Microbiological Methods (2025): 107267.

2- Kantu, Sahithi, Hema Sai Kaja, Vaishnavi Kukkala, Salah A. Aly, and Khaled Sayed. "Integrating MobileNetV3 and SqueezeNet for Multi-class Brain Tumor Classification." Journal of Imaging Informatics in Medicine (2025): 1-15.

3- Hensley, Matthew K., Khaled Sayed, Ghady Haidar, Xiaohong Wang, Panayiotis V. Benos, Sawa Ito, Annie Im et al. "Rapid Metagenomic Sequencing (RaMSes) of Bronchoalveolar Lavage Fluid for Diagnosis of Infection in Patients with Hematologic Malignancies and Pulmonary Complications." CHEST Pulmonary (2025): 100173.

1- Khaled Sayed, Christine E. Dolin, Daniel W. Wilkey, Jiang Li, Toshifumi Sato, Juliane I. Beier, Josepmaria Argemi et al. "A plasma peptidomic signature reveals extracellular matrix remodeling and predicts prognosis in alcohol-associated hepatitis." Hepatology Communications 8, no. 8 (2024): e0510.

2- Kitsios, Georgios D., Khaled Sayed, Adam Fitch, Haopu Yang, Noel Britton, Faraaz Shah, William Bain et al. "Longitudinal multicompartment characterization of host-microbiota interactions in patients with acute respiratory failure." Nature Communications 15, no. 1 (2024): 4708.

3- Shah, F.A., Bahudhanapati, H., Jiang, M., Tabary, M., van der Geest, R., Tolman, N.J., Kochin, M., Xiong, Z., Al-Yousif, N., Khaled Sayed et al. "Lung Epithelium Releases Growth Differentiation Factor 15 in Response to Pathogen-mediated Injury." American Journal of Respiratory Cell and Molecular Biology 70, no. 5 (2024): 379-391.

1- 3- Abdelrahman H. Mostafa, Muhammad A. Rushdi, Tamer A. Basha, and Khaled Sayed “FOOTBALLTrace: An AI-Based System for Football Player Tracking with Occlusion Detection and Trajectory Correction” the 11th International Conference on Sport Sciences Research and Technology Support (icSPORTS), Rome, Italy 2023

2- Minxue Jia*, Khaled Sayed*, Maria G. Kapetanaki, William Dion, Ana Mora, Robert Lafyatis, Mauricio Rojas, Bokai Zhu, Panayiotis V. Benos “LEF1 regulation is associated with senescence and aging of the lung” Aging Cell, 2023

3- Jiang Li, Toshifumi Sato, María Hernández-Tejero, Juliane I. Beier, Khaled Sayed, et al., “The plasma degradome reflects later development of NASH fibrosis after liver transplant”, Scientific Reports, 2023